Since October 2022 INRAE Micalis Institute - Jouy-en-Josas - France
2015 - 2022 Danone Nutricia Research - Palaiseau - France
2013 - 2014 INRA : Metagenopolis – (D. Ehrlich, J. Doré) - Jouy-en-Josas - France
2010 - 2012 EMBL : Bork group Computational Biology – (P. Bork) Deciphering function and evolution of biological systems - Heidelberg - Germany
2007 - 2009 Phylogenetic and Functional Biodiversity of the Human Gut Microbiota - Ecology and Physiology of the Digestive Tract (UEPSD) - INRA - Jouy-en-Josas – (M.Leclerc, J. Doré)
Thesis project : Diet impact on structural and functional dynamics of the human intestinal microbiota
March/September 2006 Bacterial population genetics labs - Biodiversity of Emerging Pathogenic Bacteria - Pasteur Institute – (S. Brisse, P. Grimont) Paris XV
Master’s degree project: genetic structure of M. prototuberculosis and origin of M. tuberculosis
March/August 2005 Unit of Genomics of Microbial Pathogens Pasteur Genopole® Île-de-France - Pasteur Institute - (P. Glaser, C. Buchrieser, F. Kuntz) Paris XV
Master’s degree project : Development of a biodiversity DNA chips for molecular typing of Listeria
April/July 2004 National Reference Center for E. coli - Biodiversity of Emerging Pathogenic Bacteria - Pasteur Institute - (F. Grimont, P. Grimont) Paris XV
Bachelor’s degree project : molecular characterization of E. coli O111 and the diversity of isolated strains in France
2007-2009 University of Pierre & Marie Curie Paris VI Ph.D. in Physiology and Pathophysiology
2005-2006 Pierre & Marie Curie Paris VI Master’s degree in Molecular Biology and Cellular - Genetics specialty
2001-2005 Paris Val de Marne University Paris XII
for up-to-date bibliography check:
Year | Title & Details | Citations |
---|---|---|
2024 | Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome N Carlino, A Blanco-Míguez, M Punčochář, C Mengoni, F Pinto, A Tatti, ... Cell | 2 |
2024 | Next-gen fermented food: Harnessing gut microbiome diversity and functions J Tap, V Hervé, S Landaud, D Werner, MH Desmonts, S Chaillou Metabolomics & Fermented Foods | 0 |
2023 | Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors J Tap, F Lejzerowicz, A Cotillard, M Pichaud, D McDonald, SJ Song, ... Nature communications 14 (1), 3310 | 12 |
2023 | Exploring Bifidobacterium species community and functional variations with human gut microbiome structure and health beyond infancy R Ladeira, J Tap, M Derrien Microbiome Research Reports 2 (2) | 5 |
2023 | Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans CI Rodriguez, A Keshavarzian, BR Hamaker, F Liu, GR Lunken, ... Scientific Data 10 (1), 346 | 2 |
2023 | Branches and ecological states of the gut microbiome: Mapping for future personalized nutritional and therapeutic interventions J Tap Journées Polepharma de Microbiomique | 0 |
2023 | Food and gut microbiome modelizations to sustain health J Tap NutrEvent | 0 |
2022 | Drinking water source and intake are associated with distinct gut microbiota signatures in US and UK populations T Vanhaecke, O Bretin, M Poirel, J Tap The Journal of nutrition 152 (1), 171-182 | 43 |
2022 | A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project A Cotillard, A Cartier-Meheust, NS Litwin, S Chaumont, M Saccareau, ... The American journal of clinical nutrition 115 (2), 432-443 | 39 |
2022 | Human gut metatranscriptome changes induced by a fermented milk product are associated with improved tolerance to a flatulogenic diet I Oyarzun, B Le Nevé, F Yañez, Z Xie, M Pichaud, G Serrano-Gómez, ... Computational and Structural Biotechnology Journal 20, 1632-1641 | 1 |
2022 | Representing Diet in a Tree-Based Format for Interactive and Exploratory Assessment of Dietary Intake Data N Litwin, K Cantrell, A Cotillard, M Derrien, A Johnson, R Knight, ... Current Developments in Nutrition 6, 774 | 0 |
2022 | EXPLORATION DES LIENS ENTRE ALIMENTATION, MICROBIOTE INTESTINAL ET INCONFORT DIGESTIF J Tap | 0 |
2021 | Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome J Tap, S Störsrud, B Le Nevé, A Cotillard, N Pons, J Doré, L Öhman, ... Microbiome 9, 1-13 | 32 |
2021 | The Human Gut Microbiota in all its States: From Disturbance to Resilience J Tap, E Ruppé, M Derrien Reference Module in Food Science | 6 |
2021 | A novel stepwise integrative analysis pipeline reveals distinct microbiota-host interactions and link to symptoms in irritable bowel syndrome A Polster, L Öhman, J Tap, M Derrien, B Le Nevé, J Sundin, H Törnblom, ... Scientific Reports 11 (1), 5521 | 4 |
2021 | A Fermented Milk Product Containing B. lactis CNCM I-2494 Improves the Tolerance of a Plant-Based Diet in Patients with Disorders of Gut–Brain Interactions BL Nevé, A Martinez-De la Torre, J Tap, AN Ruiz, M Derrien, A Cotillard, ... Nutrients 13 (12), 4542 | 2 |
2021 | Unsupervised diet partitions better explain variations of the gut microbiome compared to individual dietary markers in US adults of the American Gut Project cohort A Cotillard, S Chaumont, M Saccareau, NS Litwin, DG Lopez, J Tap, ... Current Developments in Nutrition 5, 397 | 1 |
2021 | Diet and gut microbiome interactions in irritable bowel syndrome J Tap, S Störsrud, B Le Nevé, A Cotillard, N Pons, J Doré, L Öhman, ... | 0 |
2021 | Syndrome de l'intestin irritable: Quelles sont les interactions entre la diète et le microbiome intestinal? J Tap < bound method Organization. get_name_with_acronym of< Organization: INRAE … | 0 |
2020 | Safety and functional enrichment of gut microbiome in healthy subjects consuming a multi-strain fermented milk product: a randomised controlled trial AS Alvarez, J Tap, I Chambaud, S Cools-Portier, L Quinquis, P Bourlioux, ... Scientific Reports 10 (1), 15974 | 17 |
2020 | A Fermented Milk Product with B. lactis CNCM I-2494 and Lactic Acid Bacteria Improves Gastrointestinal Comfort in Response to a Challenge Diet Rich in … B Le Nevé, A Martinez-De la Torre, J Tap, M Derrien, A Cotillard, E Barba, ... Nutrients 12 (2), 320 | 11 |
2020 | A fermented milk product with B. lactis CNCM I-2494 and lactic acid bacteria improves gastrointestinal comfort in response to a challenge diet rich in fermentable … J Tap, M Derrien, A Cotillard, E Barba, M Mego, AN Ruiz, ... | 0 |
2020 | Gut microbiome, diet and symptom interactions in irritable bowel syndrome J Tap, S Störsrud, BL Nevé, A Cotillard, N Pons, J Doré, L Öhman, ... bioRxiv 2020.02. 25.964528 | 0 |
2019 | Prediction of the intestinal resistome by a three-dimensional structure-based method E Ruppé, A Ghozlane, J Tap, N Pons, AS Alvarez, N Maziers, T Cuesta, ... Nature microbiology 4 (1), 112-123 | 165 |
2019 | Evidence for an association of gut microbial Clostridia with brain functional connectivity and gastrointestinal sensorimotor function in patients with irritable bowel syndrome … JS Labus, V Osadchiy, EY Hsiao, J Tap, M Derrien, A Gupta, K Tillisch, ... Microbiome 7, 1-15 | 110 |
2019 | Effects of the long-term storage of human fecal microbiota samples collected in RNAlater J Tap, S Cools-Portier, S Pavan, A Druesne, L Öhman, H Törnblom, ... Scientific reports 9 (1), 601 | 51 |
2019 | Fasting breath H2 and gut microbiota metabolic potential are associated with the response to a fermented milk product in irritable bowel syndrome B Le Nevé, M Derrien, J Tap, R Brazeilles, S Cools Portier, D Guyonnet, ... PLoS One 14 (4), e0214273 | 18 |
2019 | Effects of a Flatulogenic Diet Combined with a Fermented Milk Product on Markers of Flatulence and Intestinal Microbiome Composition in Healthy Subjects AM de la Torre, B Le Nevé, J Tap, A Cotillard, M Pozuelo, FPB del Río, ... Gastroenterology 156 (6), S221-S221 | 0 |
2019 | Gut microbiome hysteresis is associated with durable mucosal alterations J Tap, S Burz, A Cotillard, J Cadiou, HM Blottiere, J Dore, P Veiga, ... | 0 |
2019 | Alternative stable states of a holobiont: the intestinal microbiota-host relationship. M Van De Guchte, S Burz, J Tap, J Cadiou, J Wu, A Cotillard, C Mayeur, ... | 0 |
2018 | Altered intestinal antibacterial gene expression response profile in irritable bowel syndrome is linked to bacterial composition and immune activation SMP Bennet, J Sundin, MK Magnusson, H Strid, J Tap, M Derrien, ... Neurogastroenterology & Motility 30 (12), e13468 | 20 |
2018 | Fecal chromogranins and secretogranins are linked to the fecal and mucosal intestinal bacterial composition of IBS patients and healthy subjects J Sundin, M Stridsberg, J Tap, M Derrien, B Le Nevé, J Doré, H Törnblom, ... Scientific Reports 8 (1), 16821 | 15 |
2018 | Mo1942-Association Between Dietary Habits and the Gut Metagenome in Irritable Bowel Syndrome J Tap, M Derrien, B Le Nevé, L Ohman, H Törnblom, S Störsrud, M Simren Gastroenterology 154 (6), S-859 | 0 |
2018 | Mikrobielle Biomarker zur Krebsfrüherkennung AY Voigt, G Zeller, P Bork TumorDiagnostik & Therapie 39 (01), 55-62 | 0 |
2017 | Identification of an intestinal microbiota signature associated with severity of irritable bowel syndrome J Tap, M Derrien, H Törnblom, R Brazeilles, S Cools-Portier, J Doré, ... Gastroenterology 152 (1), 111-123. e8 | 637 |
2017 | Faecal microbiota study reveals specific dysbiosis in spondyloarthritis M Breban, J Tap, A Leboime, R Said-Nahal, P Langella, G Chiocchia, ... Annals of the rheumatic diseases 76 (9), 1614-1622 | 355 |
2017 | Clostridia from the gut microbiome are associated with brain functional connectivity and evoked symptoms in IBS JS Labus, E Hsiao, J Tap, M Derrien, A Gupta, B Le Nevé, R Brazeilles, ... Gastroenterology 152 (5), S40 | 9 |
2017 | Prediction of the intestinal resistome by a novel 3D-based method E Ruppé, A Ghozlane, J Tap, N Pons, AS Alvarez, N Maziers, T Cuesta, ... bioRxiv 196014 | 4 |
2017 | Mikrobiom und entzündliche Darmerkrankungen DM Autenrieth, DC Baumgart DMW-Deutsche Medizinische Wochenschrift 142 (04), 261-266 | 1 |
2017 | Mikrobielle Signatur für Patienten mit Reizdarmsyndrom M Hofmann-Aßmus Zeitschrift für Gastroenterologie 55 (04), 342-342 | 0 |
2016 | Lactulose challenge determines visceral sensitivity and severity of symptoms in patients with irritable bowel syndrome B Le Nevé, R Brazeilles, M Derrien, J Tap, D Guyonnet, L Ohman, ... Clinical Gastroenterology and Hepatology 14 (2), 226-233. e3 | 45 |
2016 | Microbiote intestinal, la clé pour une meilleure alimentation? P Veiga, J Tap, M Derrien médecine/sciences 32 (11), 999-1002 | 3 |
2016 | Early Phenotypical Changes induced By Transfert of Human Fecal Microbiota from Colorectal Cancer Patients to Germ-Free Mice J Tap, A Amiot, V Jarrousse, S Guilmeau, J Tran VanNhieu, P Langella, ... International Journal of Cancer and Oncology 4 (1), 1-11 | 1 |
2016 | Tripartite network analysis links symptoms to the gut microbiome brain axis in irritable bowel syndrome JS Labus, K Tillisch, J Tap, M Derrien, A Gupta, B Leneve, R Brazeilles, ... NEUROGASTROENTEROLOGY AND MOTILITY 28, 30-30 | 0 |
2016 | NEW INSIGHTS ON RELATIONSHIPS BETWEEN FODMAPS INTAKE, GUT MICROBIOTA AND SEVERITY OF SYMPTOMS IN IRRITABLE BOWEL SYNDROME J Tap, M Derrien, H Törnblom, N Pons, S Cools-Portier, J Doré, B Le Neve, ... | 0 |
2016 | Metagenomics exploration of the gut microbiome in irritable bowel syndrome J Tap | 0 |
2016 | It's all in the mix: diagnosis and management of food intolerance reply B Le Neve, R Brazeilles, M Derrien, J Tap, D Guyonnet, L Ohman, ... Clinical Gastroenterology and Hepatology 14 (8), 1222-1223 | 0 |
2015 | Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults J Tap, JP Furet, M Bensaada, C Philippe, H Roth, S Rabot, O Lakhdari, ... Environmental microbiology 17 (12), 4954-4964 | 383 |
2015 | Metagenomics of the human intestinal tract: from who is there to what is done there A Cultrone, J Tap, N Lapaque, J Doré, HM Blottière Current Opinion in Food Science 4, 64-68 | 20 |
2015 | The gut microbiota for health experts exchange: an online network for sharing knowledge P Enck, K Campbell, J Tap, PY Arnoux, JM Antoine The FASEB Journal 29, 909.4 | 1 |
2015 | Identification of a Gut Microbial Signature Linked to Severity of Irritable Bowel Syndrome J Tap, L Ohman, H Törnblom, B Le Nevé, R Brazeilles, J Doré, M Derrien, ... < bound method Organization. get_name_with_acronym of< Organization: INRAE … | 0 |
2015 | Le microbiote intestinal comme marqueur potentiel du cancer colorectal J Tap, G Zeller, AY Voigt, A Amiot, J van Nhieu, P Schrotz-King, M Kloor, ... | 0 |
2014 | An integrated catalog of reference genes in the human gut microbiome J Li, H Jia, X Cai, H Zhong, Q Feng, S Sunagawa, M Arumugam, ... Nature biotechnology 32 (8), 834-841 | 2133 |
2014 | Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828 | 1126 |
2014 | Potential of fecal microbiota for early‐stage detection of colorectal cancer G Zeller, J Tap, AY Voigt, S Sunagawa, JR Kultima, PI Costea, A Amiot, ... Molecular systems biology 10 (11), 766 | 1113 |
2014 | Gut Microbiota Variations Correlate with Disease Activity in Spondyloarthritis (SpA) and Rheumatoid Arthritis (RA). J Tap, J Abou-Ghantous, A Leboime, RS Nahal, P Langella, HJ Garchon, ... ARTHRITIS & RHEUMATOLOGY 66, S273-S273 | 1 |
2014 | Method for diagnosing adenomas and/or colorectal cancer (CRC) based on analyzing the gut microbiome P Bork, J Tap, G Zeller, A Voigt, JR Kultima, PI Costea, D Mende, ... EP Patent EP P2955232A1 | 0 |
2014 | Procédé de diagnostic d'adénomes et/ou du cancer colorectal (CRC) basé sur l'analyse du microbiome intestinal P Bork, J Tap, G Zeller, AY Voigt, JR Kultima, PI Costea, D Mende, ... | 0 |
2013 | Richness of human gut microbiome correlates with metabolic markers E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ... Nature 500 (7464), 541-546 | 4895 |
2013 | Genomic variation landscape of the human gut microbiome S Schloissnig, M Arumugam, S Sunagawa, M Mitreva, J Tap, A Zhu, ... Nature 493 (7430), 45-50 | 966 |
2013 | Metagenomic species profiling using universal phylogenetic marker genes S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ... Nature methods 10 (12), 1196-1199 | 520 |
2013 | Gut microbiota after gastric bypass in human obesity: increased richness and associations of bacterial genera with adipose tissue genes LC Kong, J Tap, J Aron-Wisnewsky, V Pelloux, A Basdevant, JL Bouillot, ... The American journal of clinical nutrition 98 (1), 16-24 | 464 |
2013 | Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis P Supply, M Marceau, S Mangenot, D Roche, C Rouanet, V Khanna, ... Nature genetics 45 (2), 172-179 | 357 |
2013 | MetaHIT consortium E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ... Richness of human gut microbiome correlates with metabolic markers. Nature … | 99 |
2013 | Individuality and temporal stability of the human gut microbiome S Sunagawa, S Schloissnig, M Arumugam, K Forslund, M Mitreva, J Tap, ... Central Asian Journal of Global Health 2 (Suppl) | 7 |
2013 | Gut microbiota after gastric bypass in human obesity: increased richness and associations of bacterial genera with adipose tissue genes. KLC Kong LingChun, J Tap, J Aron-Wisnewsky, V Pelloux, A Basdevant, ... | 0 |
2011 | Enterotypes of the human gut microbiome M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ... nature 473 (7346), 174-180 | 8468 |
2011 | Microbial dysbiosis in colorectal cancer (CRC) patients I Sobhani, J Tap, F Roudot-Thoraval, JP Roperch, S Letulle, P Langella, ... PloS one 6 (1), e16393 | 997 |
2011 | Identification of NF‐κB Modulation Capabilities within Human Intestinal Commensal Bacteria O Lakhdari, J Tap, F Béguet-Crespel, K Le Roux, T De Wouters, ... BioMed Research International 2011 (1), 282356 | 95 |
2011 | Research Article Identification of NF-κB Modulation Capabilities within Human Intestinal Commensal Bacteria O Lakhdari, J Tap, F Béguet-Crespel, K Le Roux, T de Wouters, ... | 0 |
2010 | A human gut microbial gene catalogue established by metagenomic sequencing J Qin, R Li, J Raes, M Arumugam, KS Burgdorf, C Manichanh, T Nielsen, ... nature 464 (7285), 59-65 | 13458 |
2010 | Differential adaptation of human gut microbiota to bariatric surgery–induced weight loss: links with metabolic and low-grade inflammation markers JP Furet, LC Kong, J Tap, C Poitou, A Basdevant, JL Bouillot, D Mariat, ... Diabetes 59 (12), 3049-3057 | 1490 |
2010 | Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes L Tasse, J Bercovici, S Pizzut-Serin, P Robe, J Tap, C Klopp, BL Cantarel, ... Genome research 20 (11), 1605-1612 | 282 |
2010 | Functional metagenomics: a high throughput screening method to decipher microbiota-driven NF-κB modulation in the human gut O Lakhdari, A Cultrone, J Tap, K Gloux, F Bernard, SD Ehrlich, F Lefevre, ... PloS one 5 (9), e13092 | 110 |
2010 | Adaptation of intestinal microbiota after weight loss: Effects of gastric bypass (GBP) in massively obese subjects. LC Kong, JP Furet, J Tap, C Poitou, A Basdevant, JL Bouillot, G Corthier, ... Diabetes & Metabolism 36, A7-A8 | 3 |
2010 | Differential adaptation of human gut microbiota to bariatric surgery-induced weight loss: links with metabolic and low-grade inflammatory markers LC Kong, JP Furet, J Tap, C Poitou-Bernert, A Basdevant, JL Bouillot, ... Diabetes 59, A486-A486 | 1 |
2009 | Towards the human intestinal microbiota phylogenetic core J Tap, S Mondot, F Levenez, E Pelletier, C Caron, JP Furet, E Ugarte, ... Environmental microbiology 11 (10), 2574-2584 | 1175 |
2009 | Comparative assessment of human and farm animal faecal microbiota using real-time quantitative PCR JP Furet, O Firmesse, M Gourmelon, C Bridonneau, J Tap, S Mondot, ... FEMS microbiology ecology 68 (3), 351-362 | 469 |
2009 | Towards the healthy human intestinal microbiota phylogenetic core? J Tap, S Mondot, F Levenez, E Pelletier, C Caron, JP Furet, E Ugarte, ... Microbial Ecology 57 (3), 580-581 | 5 |
2009 | Impact du régime alimentaire sur la dynamique structurale et fonctionnelle du microbiote intestinal humain J Tap Université Pierre et Marie Curie | 4 |
2009 | Vers le noyau phylogenetique du microbiote intestinal human J Tap, S Mondot, F Levenez, E Pelletier, C Caron, J Furet, JP Pierre, ... | 0 |
2009 | Impact du régime alimentaire sur la dynamique structurale et fonctionnelle du microbiote intestinal humain| Theses. fr J Tap Paris 6 | 0 |
2009 | Phylogenetic and Functional Specificities of Crohn’s Disease Microbiota S Mondot, J Tap, JP Furet, P Lepage, J Doré, P Marteau, M Leclerc | 0 |
2006 | Structure génétique de Mycobacterium prototuberculosis et origine de M. tuberculosis. J Tap < bound method Organization. get_name_with_acronym of< Organization: INRAE … | 0 |
2004 | Caractérisation moléculaire des Escherichia coli O111 et diversité des souches isolées en France J Tap Rapport de stage. Unité Biodiversité Bactéries Pathogènes Emergentes. Centre … | 1 |
2003 | Les mycotoxines G Royer, J TAP Université Paris XII Année 2004 | 2 |
NA | Genome analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of the etiologic agent of tuberculosis P Supply, M Marceau, S Mangenot, D Roche, C Rouanet, V Khanna, ... | 0 |